{"id":869,"date":"2025-11-26T05:29:03","date_gmt":"2025-11-26T05:29:03","guid":{"rendered":"https:\/\/anhkim.site\/?page_id=869"},"modified":"2025-12-01T05:36:23","modified_gmt":"2025-12-01T05:36:23","slug":"publications","status":"publish","type":"page","link":"https:\/\/anhkim.site\/index.php\/publications\/","title":{"rendered":"PUBLICATIONS"},"content":{"rendered":"
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246. G-quadruplex-dependent transcriptional regulation by molecular condensation in the Bcl3 promoter.\n
Yoo W, Song YW, Bansal V, Kim KK.\n
Nucleic Acids Res. 2025 Aug 27;53(16):gkaf827. doi: 10.1093\/nar\/gkaf827.<\/p>\n

245. In vivo brown adipogenic reprogramming induced by a small molecule cocktail\n
Kannappan S, Kim Y, De D, Ginting RP, Yang HG, Kim K, Bansal V, Jung SM, Ahn JY, Um SH, Lee MW, Lee JH, Kim KK.\n
Biomaterials. 2026 Jan;324:123463. doi: 10.1016\/j.biomaterials.2025.123463. Epub 2025 Jun 2.<\/p>\n

244. Optimizing Sample Preparation for Cryogenic Electron Microscopy.\n
Lee J, Kim T, Kim KK.\n
J Vis Exp. 2025 Apr 11;(218). doi: 10.3791\/67237.<\/p>\n

243. Targeting the G-quadruplex as a novel strategy for developing antibiotics against hypervirulent drug-resistant Staphylococcus aureus.<\/em>\n
Sultan M, Razzaq M, Lee J, Das S, Kannappan S, Subramani VK, Yoo W, Kim T, Lee HR, Chaurasia AK, Kim KK.\n
J Biomed Sci. 2025 Feb 5;32(1):15. doi: 10.1186\/s12929-024-01109-3.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2024<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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242. USP21-EGFR signaling axis is functionally implicated in metastatic colorectal cancer.\n
Shin JH, Kim MJ, Kim JY, Choi B, Kang Y, Kim SH, Lee HJ, Kwon D, Cho YB, Kim KK, Chun E, Lee KY.\n
Cell Death Discov. 2024 Dec 18;10(1):492. doi: 10.1038\/s41420-024-02255-1.<\/p>\n

241. The host protease KLK5 primes and activates spike proteins to promote human betacoronavirus replication and lung inflammation.\n
Kim H, Kang Y, Kim S, Park D, Heo SY, Yoo JS, Choi I, N MPA, Ahn JW, Yang JS, Bak N, Kim KK, Lee JY, Choi YK.\n
Sci Signal. 2024 Aug 20;17(850):eadn3785. doi: 10.1126\/scisignal.adn3785. Epub 2024 Aug 20.<\/p>\n

240. G-quadruplex as an essential structural element in cytomegalovirus replication origin.\n
Park D, Chung WC, Gong S, Ravichandran S, Lee GM, Han M, Kim KK, Ahn JH.\n
Nat Commun. 2024 Aug 27;15(1):7353. doi: 10.1038\/s41467-024-51797-6.<\/p>\n

239. Repeated Exposure of Vancomycin to Vancomycin-Susceptible Staphylococcus aureus (VSSA) Parent Emerged VISA and VRSA Strains with Enhanced Virulence Potentials.\n
Nguyen A, Roy JJS, Kim JH, Yun KH, Lee W, Kim KK, Kim T, Chaurasia AK.\n
J Microbiol. 2024 Jul;62(7):535-553. doi: 10.1007\/s12275-024-00139-8. Epub 2024 May 30.<\/p>\n

238. Neuropathogenesis-on-chips for neurodegenerative diseases.\n
Amartumur S, Nguyen H, Huynh T, Kim TS, Woo RS, Oh E, Kim KK, Lee LP, Heo C.\n
Nat Commun. 2024 Mar 12;15(1):2219. doi: 10.1038\/s41467-024-46554-8.<\/p>\n

237. Cryo-electron microscopy-based drug design.\n
Cebi E, Lee J, Subramani VK, Bak N, Oh C, Kim KK.\n
Front Mol Biosci. 2024 Mar 4;11:1342179. doi: 10.3389\/fmolb.2024.1342179. eCollection 2024.<\/p>\n

236. Utilizing peptide-anchored DNA templates for novel programmable nanoparticle assemblies in biological macromolecules: A review.\n
Kannappan S, Jo K, Kim KK, Lee JH.\n
Int J Biol Macromol. 2024 Jan;256(Pt 2):128427. doi: 10.1016\/j.ijbiomac.2023.128427. Epub 2023 Nov 26.<\/p>\n

235. Cryo-EM structure of a 16.5-kDa small heat-shock protein from Methanocaldococcus Lee J, Ryu B, Kim T, Kim KK.\n
Int J Biol Macromol. 2024 Feb;258(Pt 1):128763.\n
doi: 10.1016\/j.ijbiomac.2023.128763. Epub 2023 Dec 15.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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234. Molecular basis for SOX2-dependent regulation of super-enhancer activity.\n
Yoo W, Song YW, Kim J, Ahn J, Kim J, Shin Y, Ryu JK, Kim KK.\n
Nucleic Acids Res. 2023 Nov 1:gkad908. doi: 10.1093\/nar\/gkad908.<\/p>\n

233. Structural understanding of SARS-CoV-2 virus entry to host cells.\n
Le K, Kannappan S, Kim T, Lee JH, Lee HR, Kim KK.\n
Front Mol Biosci. 2023 Nov 2;10:1288686. doi: 10.3389\/fmolb.2023.1288686. eCollection 2023.<\/p>\n

232. Identification of an antivirulence agent targeting the master regulator of virulence genes in Staphylococcus aureus\n
Arya R, Kim T, Yun J, Bae T, Kim KK.\n
Front Cell Infect Microbiol. 2023 Oct 31;13:1268044. doi: 10.3389\/fcimb.2023.1268044<\/p>\n

231. Sensor histidine kinases kdpD and aauS regulate biofilm and virulence in Pseudomonas aeruginosa PA14.\n
Sultan M, Arya R, Chaurasia AK, Kim KK.\n
Front Cell Infect Microbiol. 2023 Oct 10;13:1270667. doi: 10.3389\/fcimb.2023.1270667<\/p>\n

230-1.Toward Visualizing Genomic DNA Using Electron Microscopy via DNA Metallization,\n
Xuelin Jin X, Kannappan S, Hapsari ND, Jin Y, Kim KK, Lee JH, Jo K\n
Small structures 2023 Mar 08.https:\/\/doi.org\/10.1002\/sstr.202200361<\/p>\n

230. Structural and Biochemical Insights into Bis(2-hydroxyethyl) Terephthalate Degrading Carboxylesterase Isolated from Psychrotrophic Bacterium Exiguobacterium antarcticum.\n
Hwang J, Yoo W, Shin SC, Kim KK, Kim HW, Do H, Lee JH.\n
Int J Mol Sci. 2023 Jul 27;24(15):12022. doi: 10.3390\/ijms241512022.<\/p>\n

229. Stabilization of RNA G-quadruplexes in the SARS-CoV-2 genome inhibits viral infection via translational suppression.\n
Razzaq M, Han JH, Ravichandran S, Kim J, Bae JY, Park MS, Kannappan S, Chung WC, Ahn JH, Song MJ, Kim KK.\n
Arch Pharm Res. 2023 Jul;46(7):598-615. doi: 10.1007\/s12272-023-01458-x. Epub 2023 Aug 10.<\/p>\n

228. Feruloyl Esterase (LaFae) from Lactobacillus acidophilus: Structural Insights and Functional Characterization for Application in Ferulic Acid Production.\n
Jeon S, Hwang J, Do H, Le LTHL, Lee CW, Yoo W, Lee MJ, Shin SC, Kim KK, Kim HW, Lee JH.\n
Int J Mol Sci. 2023 Jul 6;24(13):11170. doi: 10.3390\/ijms241311170.<\/p>\n

227. Binding of USP4 to cortactin enhances cell migration in HCT116 human colon cancer cells.\n
Yun SI, Kwak C, Lee SY, Shin S, Oh C, Kim JS, Rhee HW, Kim KK.\n
FASEB J. 2023 May;37(5):e22900. doi: 10.1096\/fj.202201337RRR.<\/p>\n

226. Crystal structure and biochemical analysis of acetylesterase (LgEstI) from Lactococcus garvieae.\n
Do H, Yoo W, Wang Y, Nam Y, Shin SC, Kim HW, Kim KK, Lee JH.\n
PLoS One. 2023 Feb 6;18(2):e0280988. doi: 10.1371\/journal.pone.0280988. eCollection 202<\/p>\n

225. Characterization of Z-DNA Using Circular Dichroism.\n
Subramani VK, Kim KK.\n
Methods Mol Biol. 2023;2651:33-51. doi: 10.1007\/978-1-0716-3084-6_2.PMID: 36892757<\/p>\n

224. Towards Visualizing Genomic DNA Using Electron Microscopy via DNA Metallization\n
Jin Z, Kannappan S, Hapsari ND, Jin Yu, Kim KK, Lee JH, JO K.\n
First published: 08 March 2023, https:\/\/doi.org\/10.1002\/sstr.202200361<\/p>\n

223. Strategic Application of Epigenetic Regulators for Efficient Neuronal Reprogramming of Human Fibroblasts.\n
Fernandes GS, Singh RD, De D, Kim KK.\n
Int J Stem Cells. 2023 Feb 28. doi: 10.15283\/ijsc22183. Online ahead of print.<\/p>\n

222. G-quadruplexes formed by Varicella-Zoster virus reiteration sequences suppress expression of glycoprotein C and regulate viral cell-to-cell spread.\n
Chung WC, Ravichandran S, Park D, Lee GM, Kim YE, Choi Y, Song MJ, Kim KK, Ahn JH.\n
PLoS Pathog. 2023 Jan 11;19(1):e1011095. doi: 10.1371\/journal.ppat.1011095. eCollection 2023 Jan.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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221. DNA-Wrapped CNT Sensor for Small Nucleic Acid Detection: Influence of Short Complementary Sequence.\n
Kannappan S, Chang J, Sundharbaabu PR, Heo JH, Sung WK, Ro JC, Kim KK, Rayappan JB, Lee JH.\n
BioChip Journal volume 16, pages490\u2013500 (2022) 02 November 2022<\/p>\n

220. Crystallographic Studies of Enzymes (Volume II)\n
TD Kim, KK Kim\n
Crystals 2022, 12(10), 1402; https:\/\/doi.org\/10.3390\/cryst12101402<\/p>\n

219. Staphylococcus aureus does not synthesize arginine from proline under physiological conditions.\n
Bae T, Jeong B, Shah M, Roh E, Kim KK, Park I.\n
Journal of Bacteriology 2022 Jun 21;204(6):e0001822. DOI: https:\/\/doi.org\/10.1128\/jb.00018-22<\/p>\n

218. Dual functional roles of a novel bifunctional \u03b2-lactamase\/esterase from Lactococcus garvieae\n
LTHL Le, W Yoo, Y Wang, S Jeon, KK Kim, HW Kim, TD Kim\n
International Journal of Biological Macromolecules 206, 203-212<\/p>\n

217. A quorum-based fluorescent probe for imaging pathogenic bacteria\n
Shrivastava S, Arya R, Kim KK, NE Lee NE.\n
Journal of Materials Chemistry B 10 (23), 4491-4500,  13 May 2022, https:\/\/doi.org\/10.1039\/D2TB00247G<\/p>\n

216. Generation of a Pure Culture of Neuron-like Cells with a Glutamatergic Phenotype from Mouse Astrocytes.\n
Fernandes GS, Singh RD, Kim KK.\n
Biomedicines. 2022 Apr 18;10(4):928. doi: 10.3390\/biomedicines10040928.<\/p>\n

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215. Functional and Structural Changes in the Membrane-Bound O-Acyltransferase Family Member 7 (MBOAT7) Protein: The Pathomechanism of a Novel MBOAT7 Variant in Patients With Intellectual Disability.\n
Lee J, Shamim A, Park J, Jang JH, Kim JH, Kwon JY, Kim JW, Kim KK, Lee J.\n
Front Neurol. 2022 Apr 18;13:836954. doi: 10.3389\/fneur.2022.836954. eCollection 2022.<\/p>\n

214. Identification, Characterization, and Preliminary X-ray Diffraction Analysis of a Novel Esterase (ScEst) from Staphylococcus chromogenes\n
Hwang J, Jeon S, Lee MJ, Yoo W, Chang J, Kim KK, Lee JH, Do H, Kim TD.\n
Crystals 2022 Apr 2; 12(4), 546; https:\/\/doi.org\/10.3390\/cryst12040546<\/p>\n

213. Analysis of Novel Drug-Resistant Human Cytomegalovirus DNA Polymerase Mutations Reveals the Role of a DNA-Binding Loop in Phosphonoformic Acid Resistance.\n
Park KR, Kim YE, Shamim A, Gong S, Choi SH, Kim KK, Kim YJ, Ahn JH.\n
Front Microbiol. 2022 Feb 3;13:771978. doi: 10.3389\/fmicb.2022.771978. eCollection 2022.<\/p>\n

212. Interaction of Prion Peptides with DNA Structures.\n
Tandon A, Subramani VK, Kim KK, Park SH.\n
ACS Omega. 2021 Dec 20;7(1):176-186. doi: 10.1021\/acsomega.1c04328. eCollection 2022 Jan 11.<\/p>\n

211. Sequence Analysis and Preliminary X-ray Crystallographic Analysis of an Acetylesterase (LgEstI) from Lactococcus garvieae\n
Do H, Wang Y, Lee CW, Yoo W, Jeon S, Hwang J, Lee MJ, Kim KK, Kim HW, Lee JH, Kim TD.\n
Crystals 2022, 12(1), 46; https:\/\/doi.org\/10.3390\/cryst12010046<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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210. Purification and Crystallographic Analysis of a Novel Cold-Active Esterase (HaEst1) from Halocynthiibacter arcticus\n
Jeon S, Hwang J, Yoo W, Chang JW, Do H, Kim HW, Kim KK, Lee JH, Kim TD.\n
Crystals 2021, 11(2), 170; https:\/\/doi.org\/10.3390\/cryst11020170<\/p>\n

209. Roles of Two-Component Systems in Pseudomonas aeruginosa Virulence\n
Maria Sultan, Rekha Arya, and Kyeong Kyu Kim\n
Int. J. Mol. Sci. 2021, 22(22), 12152; https:\/\/doi.org\/10.3390\/ijms222212152<\/p>\n

208. Ftsh Sensitizes Methicillin-Resistant Staphylococcus aureus to \u03b2-Lactam Antibiotics by Degrading YpfP, a Lipoteichoic Acid Synthesis Enzyme.\n
Yeo WS, Jeong B, Ullah N, Shah MA, Ali A, Kim KK, Bae T.\n
Antibiotics (Basel). 2021 Oct 1;10(10):1198. doi:10.3390\/antibiotics10101198.<\/p>\n

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207. AC-motif: a DNA motif containing adenine and cytosine repeat plays a role in gene regulation.\n
Hur JH, Kang CY, Lee S, Parveen N, Yu J, Shamim A, Yoo W, Ghosh A, Bae S, Park CJ, Kim KK.\n
Nucleic Acids Res. 2021 Sep 1:gkab728. doi: 10.1093\/nar\/gkab728<\/p>\n

206. The effect of hairpin loop on the structure and gene expression activity of the long-loop G-quadruplex.\n
Ravichandran S, Razzaq M, Parveen N, Ghosh A, Kim KK.\n
Nucleic Acids Res. 2021 Aug 27:gkab739. doi: 10.1093\/nar\/gkab739.<\/p>\n

205. An Antibacterial Nanorobotic Approach for the Specific Targeting and Removal of Multiple Drug-Resistant Staphylococcus aureus.\n
Batool N, Yoon S, Imdad S, Kong M, Kim H, Ryu S, Lee JH, Chaurasia AK, Kim KK.\n
Small. 2021 Apr 10:e2100257. doi: 10.1002\/smll.202100257. <\/p>\n

204. Genome-wide analysis of Staphylococcus aureus sequence type 72 isolates provides insights into resistance against antimicrobial agents and virulence potential\n
Batool N, Shamim A, Chaurasia AK, Kim KK\n
Front. Microbiol., 20 January 2021; 613800 | https:\/\/doi.org\/10.3389\/fmicb.2020.613800<\/p>\n

203. MD-TSPC4: Computational Method for Predicting the Thermal Stability of I-Motif\n
Shamim A, Razzaq M, Kim KK\n
Int. J. Mol. Sci. 2021, 22, 61. https:\/\/dx.doi.org\/10.3390\/ ijms22010061<\/p>\n

201. Targeted epigenetic modulation using a DNA-based histone deacetylase inhibitor enhances cardiomyogenesis in mouse embryonic stem cells. \n
Lee JA, An J, Taniguchi J, Kashiwazaki G, Pandian GN, Parveen N, Kang TM, Sugiyama H, De D, Kim KK.\n
J Cell Physiol. 2021 May;236(5):3946-3962. doi: 10.1002\/jcp.30140. Online ahead of print<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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200. Pontin arginine methylation by CARM1 is crucial for epigenetic regulation of autophagy.\n
Yu YS, Shin HR, Kim D, Baek SA, Choi SA, Ahn H, Shamim A, Kim J, Kim IS, Kim KK, Won KJ, Baek SH.\n
Nat Commun. 2020 Dec 8;11(1):6297. doi: 10.1038\/s41467-020-20080-9.<\/p>\n

199. Draft Genome Sequences of Lysostaphin-Resistant (K07-204) and Lysostaphin-Susceptible (K07-561) Staphylococcus aureus<\/em> Sequence Type 72 Strains Isolated from Patients in South Korea\n
Batool N, Ko KS, Chaurasia AK, Kim KK\n
Microbiology Resource Announcements 2020 9(49) e1057-20 DOI: 10.1128\/MRA.01057-20<\/p>\n

198. Molecular Packing Interaction in DNA Crystals\n
Shamim A, Parveen N, Subramani VK, Kim KK\n
Crystals 2020, 10(12), 1093; https:\/\/doi.org\/10.3390\/cryst10121093 <\/p>\n

197. Functional identification of serine hydroxymethyltransferase as a key gene involved in lysostaphin resistance and virulence potential of Staphylococcus aureus strains\n
Batool N, Ko KS, Chaurasia AK, Kim KK\n
Int. J. Mol. Sci. 2020, 21(23), 9135; https:\/\/doi.org\/10.3390\/ijms21239135 (registering DOI)<\/p>\n

196. Sphingosylphosphorylcholine blocks ovariectomy-induced bone loss by suppressing Ca2+ \/calmodulin-mediated osteoclast differentiation.\n
Lee HY, Cho KM, Kim MK, Lee M, Kim H, Choi CY, Kim KK, Park JS, Kim HH, Bae YS.\n
J Cell Mol Med. 2020 Nov 23. doi: 10.1111\/jcmm.16101.<\/p>\n

195. Proline Hinged Amphipathic \u03b1-Helical Peptide Sensitizes Gram-Negative Bacteria to Various Gram-Positive Antibiotics.\n
Hyun S, Choi Y, Jo D, Choo S, Park TW, Park SJ, Kim S, Lee S, Park S, Jin SM, Cheon DH, Yoo W, Arya R, Chong YP, Kim KK, Kim YS, Lee Y, Yu J.\n
J Med Chem. 2020 Nov 18. 2020, 63, 23, 14937\u201314950, doi: 10.1021\/acs.jmedchem.0c01506.<\/p>\n

194. Crystallization and Preliminary X-ray Diffraction Study of a Novel Bacterial Homologue of Mammalian Hormone-Sensitive Lipase (halip1) from Halocynthiibacter arcticus\n
Jeon S, Hwang J, Yoo W, Do H, Kim HW, Kim KK , Lee JH, Kim TD\n
Crystals 2020, 10(11), 963; https:\/\/doi.org\/10.3390\/cryst10110963<\/p>\n

193. Identification, characterization, and immobilization of a novel YbfF esterase from Halomonas elongata.\n
Yoo W, Kim B, Jeon S, Kim KK, Kim TD.\n
Int J Biol Macromol. 2020 Oct 6;165(Pt A):1139-1148. doi:10.1016\/j.ijbiomac.2020.09.247.<\/p>\n

192. Improved differentiation of human adipose stem cells to insulin-producing b-like cells using PDFGR kinase inhibitor Tyrphostin9\n
Mandal P, De D, Yun K, Kim KK.\n
Biochem Biophys Res Commun. 2020 Nov 26;533(1):132-138. doi: 10.1016\/j.bbrc.2020.08.090. Epub 2020 Sep 12.<\/p>\n

191. Biodiesel and flavor compound production using a novel promiscuous cold-adapted SGNH-type lipase (Ha SGNH1) from the psychrophilic bacterium Halocynthiibacter arcticus\n
LTHL Le, W Yoo, S Jeon, C Lee, KK Kim, JH Lee, TD Kim\n
Biotechnology for Biofuels 2020 Mar 16; 13 (1), 1-13<\/p>\n

190. Crystallographic Studies of Enzymes\n
TD Kim, KK Kim\n
Crystals 2020, 10 (1), 6<\/p>\n

189. New screening system using Twist1 promoter activity identifies dihydrorotenone as a potent drug targeting cancer-associated fibroblasts.\n
Lee E, Yeo SY, Lee KW, Lee JA, Kim KK, Kim SH.\n
Sci Rep. 2020 Apr 27;10(1):7058. doi: 10.1038\/s41598-020-63996-4.<\/p>\n

188. A membrane -bound transcription factor is proteolytically regulated by the 2 AAA+ protease FtsH in Staphylococcus aureus.\n
Won – Sik Yeo, Chiamara Anokwute, Philip Marcadis, Marcus Levitan, Mahmoud Ahmed, Yeun Bae, Kyeongkyu Kim, Tatiana Kostrominova, Qian Liu, and Taeok Bae\n
J. Bacteriol.2020, Apr 9; 202(9) doi:10.1128\/JB.00019-20<\/p>\n

187. Ubiquitin-Specific Protease 21 Promotes Colorectal Cancer Metastasis by Acting as a Fra-1 Deubiquitinase. <\/span>\n
Yun SI, Hong HK, Yeo SY, Kim SH, Cho YB, Kim KK. <\/span>\n
Cancers 2020, Jan 14; 12(1), 207; https:\/\/doi.org\/10.3390\/cancers12010207<\/span><\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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186. Characterization and immobilization of a novel SGNH family esterase (LaSGNH1) from Lactobacillus acidophilus NCFM\n
Le L, Yoo W, Jeon S, Kim KK and Kim DH\n
Int. J. Mol. Sci. 2019, Dec 21; 21(1), 91; doi:10.3390\/ijms21010091<\/p>\n

185. Molecular characterization of a novel family VIII esterase with b-lactamase activity (PsEsta) from paeninacillis sp.\n
Sena Kwon S, Yoo WK, Kim KK, Kim YO, Kim DH\n
Biomolecules 2019, 9, 786; doi:10.3390\/biom9120786<\/p>\n

184. Carboxylic Ester Hydrolases in Bacteria: Active Site, Structure, Function and Application.\n
Oh C, Kim DH, Kim KK.\n
Crystals 2019 Nov 14; 9, 597; doi:10.3390\/cryst9110597.<\/p>\n

183. Molecular characterization of a novel cold-active hormone-sensitive lipase (HaHSL) from halocynthiibacter arcticus\n
Le LTHL, Yoo W, Lee C, Wang Y, Jeon S, Kim KK, Lee JH, Kim TD.\n
Biomolecules. 2019 Nov 5;9(11). pii: E704. doi: 10.3390\/biom9110704.<\/p>\n

182. Unraveling the G-quadruplex Puzzle: Lessons from Genome-wide and Transcriptome-wide Studies\n
Ravichandran S, Ahn JH, Kim KK.\n
Front Genet. 2019 Oct 18;10:1002. doi: 10.3389\/fgene.2019.01002. eCollection 2019. Review.<\/p>\n

181. Pneumococcal VncR serotype-specifically regulates capsule polysaccharide synthesis\n
Ghosh P, Shah M, Ravichandran S, Park SS, Iqbal H, Choi S, Kim KK, Rhee DK.\n
Front Microbiol. 2019 Oct 1;10:2279. doi: 10.3389\/fmicb.2019.02279. eCollection 2019.<\/p>\n

180. Contribution of SLC22A12 on hypouricemia and its clinical significance for screening purposes.\n
Cha DH, Gee HY, Cachau R, Choi JM, Park D, Jee SH, Ryu S, Kim KK, Won HH, Limou S, Myung W, Winkler CA, Cho SK.\n
Sci Rep. 2019 Oct 7;9(1):14360. doi: 10.1038\/s41598-019-50798-6.<\/p>\n

179. Structural and functional characterization of a novel cold-active S-formylglutathione hydrolase (SfSFGH) homolog from Shewanella frigidimarina, a psychrophilic bacterium.\n
Lee CW, Yoo W, Park SH, Le LTHL, Jeong CS, Ryu BH, Shin SC, Kim HW, Park H, Kim KK, Kim TD, Lee JH.\n
Microb Cell Fact. 2019 Aug 19;18(1):140. doi: 10.1186\/s12934-019-1190-1.<\/p>\n

178. A novel enantioselective SGNH family esterase (NmSGNH1) from Neisseria meningitides: Characterization, mutational analysis, and ester synthesis.\n
Yoo W, Le LTHL, Lee JH, Kim KK, Kim TD.\n
Biochim Biophys Acta Mol Cell Biol Lipids. 2019 Oct;1864(10):1438-1448. doi: 10.1016\/j.bbalip.2019.07.007. Epub 2019 Jul 17.<\/p>\n

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177. Targeting Mannitol Metabolism as an Alternative Antimicrobial Strategy Based on the Structure-Function Study of Mannitol-1-Phosphate Dehydrogenase in Staphylococcus aureus.\n
Nguyen T, Kim T, Ta HM, Yeo WS, Choi J, Mizar P, Lee SS, Bae T, Chaurasia AK, Kim KK.\n
MBio. 2019 Jul 9;10(4). pii: e02660-18. doi: 10.1128\/mBio.02660-18.<\/p>\n

176. Computational approaches to predict noncanonical DNA\n
Parveen N, Shamim A, Cho S, Kim KK\n
Current bioinformatics 2019, 14(6), 470-479<\/p>\n

175. Identification of a New Z-DNA Inducer Using SYBR Green 1 as a DNA Conformation Sensor.\n
Hur JH, Lee AR, Yoo W, Lee JH, Kim KK.\n
FEBS Lett. 2019 Jun 29. doi: 10.1002\/1873-3468<\/p>\n

174. Characterization, immobilization, and mutagenesis of a novel cold-active acetylesterase (EaAcE) from Exiguobacterium antarcticum B7.\n
Wang Y, Le LTHL, Yoo W, Lee CW, Kim KK, Lee JH, Kim TD.\n
Int J Biol Macromol. 2019 Sep 21;136:1042-1051.<\/p>\n

173. A Selective Inhibitor of Ubiquitin-Specific Protease 4 Suppresses Colorectal Cancer Progression by Regulating b-catenin Signaling\n
Nguyen HH, Kim T, Nguyen T, Hahn MJ, Yun SI, Kim KK\n
Cell Physiol Biochem 2019;53(1):157-171. doi: 10.33594\/000000127<\/p>\n

172. Z-DNA in the genome: from structure to disease.\n
Ravichandran S, Subramani VK, Kim KK.\n
Biophys Rev. 2019 Jun;11(3):383-387.<\/p>\n

Introduction to the Korean Biophysical Society (KBPS).Editorial: Special issue of Biophysical Reviews dedicated to the joint 10th Asian Biophysics Association Symposium and 42nd Australian Society for Biophysics Meeting, Melbourne,\n Australia, December 2-6, 2018.\n
Battle AR, Norton RS, B\u00f6cking T, Noji H, Kim KK, Nagayama K.\n
Biophys Rev. 2019 Jun;11(3):245-247. doi: 10.1007\/s12551-019-00553-y.\n
Lim HH, Kim KK, Park CS.\n
Biophys Rev. 2019 Jun;11(3):267-268. doi: 10.1007\/s12551-019-00547-w.<\/p>\n

171. Suppression of the Ubiquitin Pathway by Small Molecule Binding to Ubiquitin Enhances Doxorubicin Sensitivity of the Cancer Cells.\n
Nguyen T, Ho M, Kim K, Yun SI, Mizar P, Easton JW, Lee SS, Kim KK.\n
Molecules. 2019 Mar 19;24(6). pii: E1073. doi: 10.3390\/molecules24061073.<\/p>\n

170. An alternative enzyme protection assay to overcome the drawbacks of gentamicin protection assay for measuring entry and intracellular survival of Staphylococci.\n
Kim JH, Chaurasia AK, Batool N, Ko KS, Kim KK.\n
Infect Immun. 2019 Feb 19. pii: IAI.00119-19. doi: 10.1128\/IAI.00119-19.<\/p>\n

169. Characterization and mutation anaylsis of a cold-active bacterial hormone-sensitive lipase from Salinisphaera sp. P7-4.\n
Kim BY, Yoo W, Huong Luu Le LT, Kim KK, Kim HW, Lee JH, Kim YO, Kim TD.\n
Arch Biochem Biophys. 2019 Jan 14;663:132-142. doi: 10.1016\/j.abb.2019.01.010. [Epub ahead of print]<\/p>\n

168. NMR Dynamics Study Reveals the Z\u03b1 Domain of Human ADAR1 Associates with and Dissociates from Z-RNA more slowly than Z-DNA.\n
Lee AR, Hwang J, Hur JH, Ryu KS, Kim KK, Choi BS, Kim NK, Lee JH.\n
ACS Chem Biol. 2019 Feb 15;14(2):245-255. doi: 10.1021\/acschembio.8b00914.<\/p>\n

167. Structural and functional analysis of a dimeric fumarylacetoacetate hydrolase (EaFAH) from psychrophilic Exiguobacterium antarcticum\n
Yoo W, Lee CW, Kim BY, Huong Luu Le LT, Park SH, Kim HW, Shin SC, Kim KK, Lee JH, Kim TD.\n
Biochem Biophys Res Commun. 2019 Feb 12;509(3):773-778. doi: 10.1016\/j.bbrc.2018.12.183. Epub 2019 Jan 8.<\/p>\n

166. Structural Basis for the Enantioselectivity of Esterase Est-Y29 toward (S)-Ketoprofen\n
Ngo TD, Oh C, Mizar P, Baek M, Park Ks, Nguyen L, Byeon H, Yoon S, Ryu Y, Ryu BH, Kim TD, Yang JW, Seok C, Lee SS, Kim KK.\n
ACS catalysis 2019 Jan 4;9(1):755-767. Doi:10.1021\/acscatal.8b02797<\/p>\n

165. Chemical induced conversion of mouse fibroblasts and human adipose-derived stem cells into skeletal muscle-like cells.\n
Bansal V, De D, An J, Kang TM, Jeong HJ, Kang JS, Kim KK.\n
Biomaterials. 2019 Feb;193:30-46. doi: 10.1016\/j.biomaterials.2018.11.037<\/p>\n

164. Chemical-induced formation of BZ-junction with base extrusion\n
Subramani VK, Ravichandran S, Bansal V, Kim KK.\n
Biochem Biophys Res Commun. 2019 Jan 22;508(4):1215-1220. doi: 10.1016\/j.bbrc.2018.12.045.<\/p>\n

163. Discovery of natural compounds promoting cardiomyocyte differentiation.\n
Lee JA, An J, Kang TM, De D, Kim KK.\n
Stem Cells Dev. 2019 Jan 1;28(1):13-27. doi: 10.1089\/scd.2018.0153.<\/p>\n

162. Modulating \u03b1-synuclein fibril formation using DNA tetrahedron nanostructures.\n
Yoo WK, Ryu BH, Kim KR, Wang Y, Le LTHL, Lee JH, Kim KK, Toth G, Ahn DR, Doohun Kim T.\n
Biochim Biophys Acta Gen Subj. 2019 Jan;1863(1):73-81. doi: 10.1016\/j.bbagen.2018.09.025.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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161. Total synthesis of Xanthoangelol B and its various fragments: towards inhibition of virulence factor production of Staphylococcus aureus.\n
Mizar P, Arya R, Kim T, Cha S, Ryu KS, Yeo WS, Bae T, Kim DW, Park KH, Kim KK, Lee SS.\n
J Med Chem. 2018 Nov 2. doi: 10.1021\/acs.jmedchem.8b01012. [Epub ahead of print]<\/p>\n

160. Crystal structure and functional characterization of a cold-active acetyl xylan esterase (PbAcE) from psychrophilic soil microbe Paenibacillus sp.\n
Park SH, Yoo W, Lee CW, Jeong CS, Shin SC, Kim HW, Park H, Kim KK, Kim TD, Lee JH. \n
PLoS One. 2018 Oct 31;13(10):e0206260. doi: 10.1371\/journal.pone.0206260. eCollection 2018.<\/p>\n

159. Genome-wide analysis of regulatory G-quadruplexes affecting gene expression in human cytomegalovirus.\n
Ravichandran S, Kim YE, Bansal V, Ghosh A, Hur J, Subramani VK, Pradhan S, Lee MK, Kim KK, Ahn JH.\n
PLoS Pathog. 2018 Sep 28;14(9):e1007334. doi: 10.1371\/journal.ppat.1007334. eCollection 2018 Sep.<\/p>\n

158. Sequence preference and structural heterogeneity of BZ junctions\n
Kim D, Hur J, Han JH, Ha SC, Shin D, Lee S, Park S, Sugiyama H, Kim KK.\n
Nucleic Acids Research, 2018 1 doi: 10.1093\/nar\/gky784<\/p>\n

157. Identification of 2′,4′-Dihydroxychalcone as an antivirulence agent targeting HlyU, a master virulence regulator in Vibrio vulnificus<\/em>.\n
Imdad S, Batool N, Pradhan S, Chaurasia AK, Kim KK.\n
Molecules. 2018 Jun 20;23(6). pii: E1492. doi: 10.3390\/molecules23061492.<\/p>\n

156. Identification and Validation of an Antivirulence Agent Targeting HlyU-Regulated Virulence in Vibrio vulnificus.\n
Imdad S, Chaurasia, A.K., Kim KK\n
Front Cell Infect Microbiol. 2018 May 11;8:152. doi: 10.3389\/fcimb.2018.00152. eCollection 2018<\/p>\n

155. The FDA-approved anti-cancer drugs, streptozotocin and floxuridine, reduce the virulence of Staphylococcus aureus\n
Yeo WS, Arya R, Kim KK, Jeong H, Cho KH, Bae T\n
Sci Rep. 2018 Feb 6;8(1):2521. doi: 10.1038\/s41598-018-20617-5.<\/p>\n

154. Identification and Crystallographic Analysis of a New Carbohydrate Acetylesterase (SmAcE1) from Sinorhizobium meliloti\n
Oh C, Ryu BH, Yoo W, Nguyen DD, Kim T, Ha SC, Kim TD, Kim KK.\n
Crystals 2018, Jan; doi:10.3390\/cryst8010012\n
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153. Identification, characterization, immobilization, and mutational analysis of a novel acetylesterase with industrial potential (LaAcE) from Lactobacillus acidophilus\n
Wang Y, Ryu BH, Yoo W, Lee CW, Kim KK, Lee JH, Kim TD.\n
Biochim Biophys Acta. 2018 Jan;1862(1):197-210. doi: 10.1016\/j.bbagen.2017.10.008. Epub 2017 Oct 16.<\/p>\n

152. Small molecule-induced cellular conversion. \n
De D, Halder D, Shin I, Kim KK.\n
Chem Soc Rev. 2017 Oct 16;46(20):6241-6254. doi: 10.1039\/c7cs00330g.<\/p>\n

151. A synthetic DNA-binding inhibitor of SOX2 guides human induced pluripotent stem cells to differentiate into cardiac mesoderm.\n
Taniguchi J, Pandian GN, Hidaka T, Hashiya K, Bando T, Kim KK, Sugiyama H. \n
Nucleic Acids Res. 2017 Sep 19;45(16):9219-9228. doi: 10.1093\/nar\/gkx693.<\/p>\n

150. Ubiquitin-specific protease 4 (USP4) suppresses myoblast differentiation in a catalytic-independent manner. \n
Yun SI, Kim KK.\n
Cell Signal. 2017 Mar 21;35:48-60. doi: 10.1016\/j.cellsig.2017.03.008<\/p>\n

149. Characterization of a novel SGNH-type esterase from Lactobacillus plantarum. \n
Kim Y, Ryu BH, Kim J, Yoo W, An DR, Kim BY, Kwon S, Lee S, Wang Y, Kim KK, Kim TD. \n
Int J Biol Macromol. 2017 Mar;96:560-568. doi: 10.1016\/j.ijbiomac.2016.12.061.<\/p>\n

148. Identification and Crystallization of Penicillin-Binding Protein\/\u03b2-Lactamase Homolog (Rp46) from Ruegeria Pomeroyi\n
Ryu BH, Ngo TD, Yoo W, Kim KK, Kim TD
Crystals<\/em> 2017, 7<\/em>(1), 6; doi:10.3390\/cryst7010006<\/p>\n

147. Structural and functional study of ChuY from Escherichia coli strain CFT073.\n
Kim H, Chaurasia AK, Kim T, Choi J, Ha SC, Kim D, Kim KK.\n
Biochem Biophys Res Commun. 2017 Jan 22;482(4):1176-1182.<\/p>\n

146. The mutational landscape of ocular marginal zone lymphoma identifies frequent alterations in TNFAIP3 followed by mutations in TBL1XR1 and CREBBP.\n
Jung H, Yoo HY, Lee SH, Shin S, Kim SC, Lee S, Joung JG, Nam JY, Ryu D, Yun JW, Choi JK, Ghosh A, Kim KK, Kim SJ, Kim WS, Park WY, Ko YH.\n
Oncotarget. 2017 Mar 7;8(10):17038-17049. doi: 10.18632\/oncotarget.14928.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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145. Biochemical and Structural Analysis of a Novel Esterase from Caulobacter crescentus related to Penicillin-Binding Protein (PBP)\n
Ryu BH, Ngo TD, Yoo W, Lee S, Kim BY, Lee E, Kim KK, Kim TD\n
Sci Rep. 2016 Dec 1; 6(37978)<\/p>\n

144. Bioinorganic Nanohybrid Catalyst for Multistep Synthesis of Acetaminophen, an Analgesic. \n
San BH, Ravichandran S, Park KS, Subramani VK, Kim KK.\n
ACS Appl Mater Interfaces. 2016 Nov 9;8(44):30058-30065. Epub 2016 Oct 31<\/p>\n

143. An ubiquitin-binding molecule can work as an inhibitor of ubiquitin processing enzymes and ubiquitin receptors \n
Nguyen T, Ho M, Ghosh A, Kim T, Yun SI, Lee SS, Kim KK.\n
Biochem Biophys Res Commun. 2016 Oct 7;479(1):33-9. <\/p>\n

142. Coupling of radiofrequency with magnetic nanoparticles treatment as an alternative physical antibacterial strategy against multiple drug resistant bacteria\n
Chaurasia AK, Thorat ND, Tandon A, Kim JH, Park SH, Kim KK.\n
Sci Rep. 2016 Sep 27;6:33662. doi: 10.1038\/srep33662.<\/p>\n

141. Structural studies on the extracellular domain of sensor histidine kinase YycG from Staphylococcus aureus and its functional implications. \n
Kim T, Choi J, Lee S, Yeo KJ, Cheong HK, Kim KK.\n
J Mol Biol. 2016 Jul 31;428(15):3074-89<\/p>\n

140. Structural and functional studies of a large winged Z-DNA binding domain of Danio rerio<\/em> protein kinase PKZ\n \n
\n <\/a>Subramani VK, Kim D, Yun K, Kim KK.\n
FEBS Lett. 2016 Jul;590(14):2275-85. doi: 10.1002\/1873-3468.12238. <\/p>\n

139. Examining cooperative binding of Sox2 on DC5 regulatory element upon complex formation with Pax6 through excess electron transfer assay.\n \n
\n <\/a>Saha A, Kizaki S, De D, Endo M, Kim KK*, Sugiyama H*\n
Nucleic Acids Res. 2016 Aug 19;44(14):e125. doi: 10.1093\/nar\/gkw478<\/p>\n

138. Structural and Biochemical Characterization of an Octameric Carbohydrate Acetylesterase from Sinorhizobium meliloti. <\/em>\n
Oh C, Ryu BH, An DR, Nguyen DD, Yoo W, Kim T, Ngo TD, Kim HS, Kim KK, Kim TD.\n
FEBS Lett. 2016 2016 Apr;590(8):1242-52<\/p>\n

137. Design of a RANK-mimetic peptide inhibitor of osteoclastogenesis with enhanced RANKL-binding affinity\n
Hur J, Ghosh A, Kim K, Ta HM, Kim H, Kim N, Hwang HY, Kim KK.\n
Mol Cells. 2016 Apr 30;39(4):316-21<\/p>\n

136. Ubiquitin-specific protease 4 controls metastatic potential through -catenin stabilization in brain metastatic lung adenocarcinoma. \n
Hwang SJ, Lee HW, Kim HR, Lee H, Shin CH, Yun SI, Lee DH, Kim DH, Kim KK, Joo KM, Kim HH.\n
Sci Rep. 2016 Feb 17;6:21596. doi: 10.1038\/srep21596.<\/p>\n

135. Solution structure of the Z- binding domain of PKR-like protein kinase (PKZ) from Carassius auratus and quantitative analyses of the intermediate complex during B\u2013Z transition. \n
Lee AR, Park CJ, Cheong HK, Ryu KS, Park JW, Kwon MY, Lee J, Kim KK, Choi BS, Lee JH.\n
Nucleic Acids Res. 2016 Apr 7;44(6):2936-48<\/p>\n

134. Photocurrent enhancement of SiNW-FETs by integrating protein-shelled CdSe quantum dots\n
Moh SH, Kulkarni A, San BH, Lee JH, Kim D, Park KS, Lee MH, Kim T, Kim KK
Nanoscale<\/em>, 2016 Jan 28;8:1921-1925.-<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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133. Combining suppression of stemness with lineage-specific induction leads to selective conversion of pluripotent cells into functional neurons. \n
Halder D, Chang GE, De D, Cheong E, Kim KK*, Shin I*\n
Chemistry and Biology 2015 Nov 19;22(11):1512-20<\/p>\n

132. Preparation of cobalt nanoparticles from polymorphic bacterialtemplates: A novel platform for biocatalysis.\n
Jang E, Shim HW, Ryu BH, An DR, Yoo WK, Kim KK, Kim DW, Kim TD.\n
Int J Biol Macromol. 2015 Sep 7;81:747-753.<\/p>\n

131. Crystal structure analysis of c4763, a uropathogenic Escherichia coli-specific protein.\n
Kim H, Choi J, Kim D, Kim KK.\n
Acta Crystallogr F Struct Biol Commun. 2015 Aug;71(Pt 8):1042-7<\/p>\n

130.  Ubiquitin specific protease 4 positively regulates the WNT\/\u03b2-catenin signaling in colorectal cancer.\n
Yun SI, Kim HH, Yoon JH, Park WS, Hahn MJ, Kim HC, Chung CH, Kim KK.\n
Mol Oncol. 2015 Nov;9(9):1834-51<\/p>\n

129. Structural basis for the substrate selectivity of a HAD phosphatase from Thermococcus onnurineus NA1.\n
Ngo TD, Van Le B, Subramani VK, Thi Nguyen CM, Lee HS, Cho Y, Kim KK*, Hwang HY*.\n
Biochem Biophys Res Commun. 2015 May 22;461(1):122-7<\/p>\n

128. Structural and biochemical characterization of a carbohydrate acetylesterase from Sinorhizobium meliloti 1021.\n
Kim K, Ryu BH, Kim SS, An DR, Ngo TD, Pandian R, Kim KK*, Kim TD*.\n
FEBS Lett. 2015 Jan 2;589(1):117-22<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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127. Combining Protein-Shelled Platinum Nanoparticles with Graphene to Build a Bionanohybrid Capacitor.\n
San BH, Kim JA, Kulkarni A, Moh SH, Dugasani SR, Subramani VK, Thorat ND, Lee HH, Park SH, Kim T*, Kim KK*<\/strong>.\n
ACS Nano. 2014 Dec 23;8(12):12120-9<\/p>\n

126. Crystallographic analysis and biochemical applications of a novel penicillin-binding protein\/b-lactamase homologue from a metagenomic library.  \n
Ngo TD, Ryu BH, Ju H, Jang E, Kim KK*, Kim TD*. \n
Acta Crystallogr D Biol Crystallogr. 2014 Sep;70(Pt 9):2455-2466.<\/p>\n

125. Interaction of TIF-90 and Filamin A in the Regulation of rRNA Synthesis in Leukemic Cells\n
Nguyen LX, Chan SM, Ngo TD, Raval A, Kim KK, Majeti R, Mitchell BS.\n
Blood. 2014 Jul 24;124(4):579-89<\/p>\n

124. Novel Interaction of the Z-DNA Binding Domain of Human ADAR1 with the Oncogenic c-Myc Promoter G-Quadruplex\n
Kang HJ, Le TV, Kim K, Hur J, Kim KK, Park HJ.\n
J Mol Biol. 2014 Jul 15;426(14):2594-604<\/p>\n

123. Structural and kinetic bases for the metal preference of the M18 aminopeptidase from Pseudomonas aeruginosa.\n
Nguyen DD, Pandian R, Kim D, Ha SC, Yoon HJ, Kim KS, Yun KH, Kim JH, Kim KK.\n
Biochem Biophys Res Commun. 2014 Apr 25;447(1):101-7. <\/p>\n

122. Distinct Rayleigh Scattering from Hot Spot Mutant p53 Proteins Reveals Cancer Cells. \n \n
\n <\/a>Jun HJ, Nguyen AH, Kim YH, Park KH, Kim D, Kim KK*, Sim SJ*.\n \n
\n <\/a>Small. 2014 Jul;10(14):2954-62.<\/p>\n

121. Single molecule visualization and characterization of Sox2-Pax6 complex formation on a regulatory DNA element using a DNA origami frame.\n
Yamamoto S, De D, Hidaka K, Kim KK*, Endo M*, Sugiyama H*.\n
Nano Lett. 2014 May 14;14(5):2286-92. doi: 10.1021\/nl4044949. Epub 2014 Apr 4.<\/p>\n

120. Radiofrequency treatment enhances the catalytic function of an immobilized nanobiohybrid catalyst\n
San BH, Ha EJ, Paik HJ, Kim KK.\n
Nanoscale. 2014 Jun 7;6(11):6009-17. doi: 10.1039\/c4nr00407h. Epub 2014 Apr 29.<\/p>\n

119. P42 Ebp1 regulates the proteasomal degradation of the p85 regulatory subunit of PI3K by recruiting a chaperone-E3 ligase complex HSP70\/CHIP.\n
Ko HR, Kim CK, Lee SB, Song J, Lee KH, Kim KK, Park KW, Cho SW, Ahn JY.\n
Cell Death Dis. 2014 Mar 20;5:e1131. doi: 10.1038\/cddis.2014.79.<\/p>\n

118. Crystallization and preliminary X-ray analysis of a novel type of lipolytic hydrolase from Bacillus licheniformis.\n
Ju H, Pandian R, Kim K, Kim KK*, Kim TD*.\n
Acta Crystallogr F Struct Biol Commun. 2014 Apr;70(Pt 4):473-5. <\/p>\n

117. Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ).\n
Kim D, Hur J, Park K, Bae S, Shin D, Ha SC, Hwang HY, Hohng S, Lee JH, Lee S, Kim YG, Kim KK.\n
Nucleic Acids Res. 2014 May 1;42(9):5937-48. doi: 10.1093\/nar\/gku189. Epub 2014 Mar 20.<\/p>\n

116. Structural insights into the molecular mechanism of Escherichia coli SdiA, a quorum-sensing receptor.\n
Kim T, Duong T, Wu CA, Choi J, Lan N, Kang SW, Lokanath NK, Shin D, Hwang HY, Kim KK.\n
Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):694-707<\/p>\n

115. Structural and functional characterization of an Isd-type haem-degradation enzyme from Listeria monocytogenes.\n
Duong T, Park K, Kim T, Kang SW, Hahn MJ, Hwang HY, Kim KK.\n
Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):615-26<\/p>\n

114. Crystallization and preliminary X-ray analysis of a highly stable novel SGNH hydrolase (Est24) from Sinorhizobium meliloti.\n
Ryu BH, Nguyen DD, Ngo TD, Oh C, Pandian R, Kim KK*, Kim TD*.\n
Acta Crystallogr F Struct Biol Commun. 2014 Feb 1;70(Pt 2):193-5. doi: 10.1107\/S2053230X13033918. Epub 2014 Jan 21.<\/p>\n

113. Inhibition of master transcription factors in pluripotent cells induces early stage differentiation.\n
De D, Jeong MH, Leem YE, Svergun DI, Wemmer DE, Kang JS*, Kim KK*, Kim SH*.\n
Proc Natl Acad Sci U S A. 2014 Feb 14; 111(5): 1778-83.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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112. Descriptor-Based Profile Analysis of Kinase Inhibitors to Predict Inhibitory Activity and to Grasp Kinase Selectivity\n
Park H, Kim KK*, Kim CH, Shin JM, No KT*\n
Bull. Korean Chem. Soc. 2013 Sep;34(9):2680-2684. <\/p>\n

111. Energetics of Z-DNA Binding Protein-Mediated Helicity Reversals in DNA, RNA, and DNA-RNA Duplexes”\n
Bae S, Kim Y, Kim D, Kim KK*, Kim YG*, Hohng S*
J. Phys. Chem. B,<\/em> 2013 Oct 10, 117 <\/em>(44): 13866\u201313871.<\/p>\n

110. Structure-based elucidation of the regulatory mechanism for aminopeptidase activity\n
Ta HM, Bae S, Han S, Song J, Ahn TK, Hohng S, Lee S*, Kim KK*\n
Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1738-1747. <\/p>\n

109. Structural and Functional Analyses of a Bacterial Homolog of Hormone-Sensitive Lipase from a Metagenomic Library.\n
Ngo TD, Ryu BH, Ju H, Jang E, Park K, Kim KK*, Kim TD*.\n
Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1726-1737.<\/p>\n

108. DNA Sensing-Independent Inhibition of Herpes Simplex Virus 1 Replication by DAI\/ZBP1.\n
Pham TH, Kwon KM, Kim YE, Kim KK, Ahn JH*.\n
J Virol. 2013 Mar;87(6):3076-86. doi: 10.1128\/JVI.02860-12. Epub 2013 Jan 2.<\/p>\n

107. Synthesis and electric characterization of protein-shelled CdSe quantum dots. \n
Moh SH, San BH, Kulkarni A, Kim T, Kim KK*.\n
J. Mater. Chem.C, 2013 Mar 7, 1 (13), 2412 – 2415<\/p>\n

106. Size-controlled synthesis and characterization of CoPt nanoparticles using protein shells. \n
San BH, Lee S, Moh SH, Park JG, Lee JH, Hwang HY, Kim KK*.\n
J. Mater. Chem.B, 2013 Mar 7; 1(10) 1453-1460.<\/p>\n

105. Investigation of the heating properties of platinum nanoparticles under a radiofrequency current\n
San BH, Moh SH, Kim KK*.\n
Int J Hyperthermia. 2013 Jan;29(2):99-105. doi: 10.3109\/02656736.2012.760137. Epub 2013 Jan 28<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2012<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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104. Characterization, Crystallization, and Preliminary X-ray Diffraction Analysis of a New (S)-specific Esterase (pfEstA) from Pseudomonas fluorescens KCTC 1767: Enantioselectivity for Industrial Applications\n
Kim S, Ngo TD, Kim KK*, Kim TD*\n
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Nov 1;68(Pt 11):1374-7.<\/p>\n

103. One-step immobilization and purification of his-tagged enzyme using poly (2-acetamidoacrylic acid) hydrogel\n
Ha EJ, Kim KK, Park HS, Lee SG, Lee JO, An SSA, Paik HJ\n
Macormolecular Research 2012 Oct, [Epub ahead of print]
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102. EZH2 Generates a Methyl Degron that Is Recognized by the DCAF1\/DDB1\/CUL4 E3 Ubiquitin Ligase Complex.\n
Lee JM, Lee JS, Kim H, Kim K, Park H, Kim JY, Lee SH, Kim IS, Kim J, Lee M, Chung CH, Seo SB, Yoon JB, Ko E, Noh DY, Kim KI, Kim KK, Baek SH.\n
Mol Cell. 2012 Nov 30;48(4):572-86
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101. The crystal structure of the periplasmic domain of vibrio parahaemolyticus CpxA.\n
Kwon E, Kim DY, Ngo TD, Gross CA, Gross JD, Kim KK. 
Protein Sci.<\/em> 2012 Sep;21(9):1334-43
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100. Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors.\n
Lee SJ, Lee SJ, Lee SK, Yoon HJ, Lee HH, Kim KK, Lee BJ, Lee BI, Suh SW. 
Acta Crystallogr D Biol Crystallogr.<\/em> 2012 Jul;68(Pt 7):784-93. 
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99. Identification, crystallization and preliminary X-ray diffraction analysis of esterase A from Caulobacter crescentus CB15, a family VIII lipolytic enzyme.\n
Ryu BH, Ngo TD, Jang E, Kim S, Ju H, Kim KK*, Kim TD*.\n
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 May 1;68(Pt 5):560-4. Epub 2012 Apr 21.<\/p>\n

98. The effect of protein shells on the antioxidant activity of protein-encapsulated platinum nanoparticles \n
San BH, Moh SH, Kim KK.\n
J. Mater. Chem., 2012 Feb 2:,22(5): 1774-1780<\/p>\n

97. Characterization, amyloid formation, and immobilization of a novel SGNH hydrolase from Listeria innocua 11262.\n
Kim S, Bae SY, Kim SJ, Ngo TD, Kim KK, Kim TD.
<\/strong>Int J Biol Macromol. 2012 Jan 1;50(1):103-11<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2011<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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96. Crystal Structure of the LG3 Domain of Endorepellin, an Angiogenesis Inhibitor\n
Le VB, Kim H, Choi JK, Kim JH, Hahn MJ, Lee C, Kim KK*, Hwang HY* \n
Journal of Molecular Biology 2011 Nov 25;414(2):231-42
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95. Amyloid formation using 1-butyl-3-methyl-imidazolium-based ionic liquids.\n
Bae SY, Kim S, Lee BY, Kim KK, Kim TD.\n
Anal Biochem. 2011 Dec 15;419(2):354-6. Epub 2011 Aug 10
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94. Platinum nanoparticles encapsulated by aminopeptidase: a multifunctional bioinorganic nanohybrid catalyst\n
San BH, Kim S, Moh SH, Lee H, Jung DY, Kim KK.\n
Angew Chem Int Ed Engl. 2011 Dec 9;50(50):11924-9
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93. Crystallization and diffraction analysis of Sm23: an SGNH-family arylesterase from Sinorhizobium meliloti 1021                      \n
Hwang H, Kim S, Park S, Ngo TD, Kim KK*, Kim TD*     \n
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 May 1;67(Pt 5):572-4.
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92. Solution structure of the Z\u03b2 domain of human DAI and its binding modes to B- and Z-DNAs\n
Kim K, Khayrutdinov BI, Lee CK, Cheong HK, Kang SW, Park H, Lee H, Kim YG, Rich A, Kim KK*, Jeon YH*  \n
Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6921-6. Epub 2011 Apr 6
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91. The Z\u03b2 domain of human DAI binds to Z-DNA via a novel B\u2013Z transition pathway\n
Kim HE, Ahn HC, Lee YM, Lee EH, Seo YJ, Kim YG, Kim KK, Choi BS, Lee JH\n
FEBS Lett. 2011 Mar 9;585(5):772-8. Epub 2011 Feb 4.<\/p>\n

90. Intrinsic Z-DNA Is Stabilized by the Conformational Selection Mechanism of Z-DNA-Binding Proteins.\n
Bae S, Kim D, Kim KK*, Kim YG*, Hohng S*
<\/strong>J Am Chem Soc. 2011 Feb 2;133(4):668-71.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2010<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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89. Structure-based development of a receptor activator of nuclear factor-\u03ba<\/em>B ligand (RANKL)RANKL inhibitor peptide and molecular basis for osteopetrosis.\n
Ta HM, Nguyen GT, Jin HM, Choi J, Park H, Kim N, Hwang HY, Kim KK.\n
Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20281-6. Epub 2010 Nov 8.<\/p>\n

88. The crystal structure of Escherichia coli Spy.\n
Kwon E, Kim DY, Gross CA, Gross JD, Kim KK.\n
Protein Sci. 2010 Nov;19(11):2252-9.<\/p>\n

87. Transition between B-DNA and Z-DNA: free energy landscape for the B-Z junction propagation.\n
Lee J, Kim YG, Kim KK, Seok C.\n
J Phys Chem B. 2010 Aug 5;114(30):9872-81.<\/p>\n

86. Structural basis for the negative regulation of bacterial stress response by RseB\n
Kim DY, Kwon EJ, Choi J, Hwang HY, Kim KK\n
Protein Sci. 2010 Jun;19(6):1258-63.<\/p>\n

85. Structural basis for the reaction mechanism of UDP-glucose pyrophosphorylase.\n
Kim H, Choi J, Kim T, Lokanath NK, Ha SC, Suh SW, Hwang HY, Kim KK\n
Mol. Cells. 2010 Apr;29(4):397-405.<\/p>\n

84. Crystal structure of Streptococcus pneumoniae<\/em> Sp1610, a putative tRNA methyltransferase, in complex with S-adenosyl-L-methionine (p NA)\n
Minh Ta H, Kim KK\n
Protein Sci. 2010 Mar;19(3):617-24.<\/p>\n

83. Z-DNA Binding Proteins as Targets for Structure-Based Virtual Screening.\n
Kim D, Lee YH, Hwang HY, Kim KK*, Park HJ * \n
Curr Drug Targets. 2010 Mar; 11(3):335-44.<\/p>\n

82. Structural basis for the substrate specificity of PepA from Streptococcus pneumoniae, a dodecameric tetrahedral protease.\n
Kim D, San BH, Moh SH, Park H, Kim DY, Lee S, Kim KK.\n
Biochem Biophys Res Commun. 2010 Jan 1;391(1):431-6.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2009<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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81. Enhanced SUMOylation of proteins containing a SUMO-interacting motif by SUMO-Ubc9 fusion.\n
Kim ET, Kim KK, Matunis MJ, Ahn JH.\n
Biochem Biophys Res Commun. 2009 Oct 9;388(1):41-5. Epub 2009 Jul 25.<\/p>\n

80. NMR spectroscopic elucidation of t he B-Z transition of a DNA double helix induced by the Z alpha domain of human ADAR1.\n
Kang YM, Bang J, Lee EH, Ahn HC, Seo YJ, Kim KK, Kim YG, Choi BS, Lee JH.\n
J Am Chem Soc. 2009 Aug 19;131(32):11485-91.<\/p>\n

79. Base extrusion is found at helical junctions between right- and left-handed forms of DNA and RNA.\n
Kim D, Reddy S, Kim DY, Rich A, Lee S, Kim KK*, Kim YG* \n
Nucleic Acids Res. 2009 Jul;37(13):4353-59. Epub 2008 May 21<\/p>\n

78. Disulfide bond as a structural determinant of prion protein membrane insertion.\n
Shin JY, Shin JI, Kim JS, Yang YS, Shin YK, Kim KK, Lee S, Kweon DH.\n
Mol Cells. 2009 Jun;27(6):673-80. Epub 2009 Jun 12.<\/p>\n

77. Structural and functional characterization of soluble endoglin receptor. \n
Van Le B, Franke D, Svergun DI, Han T, Hwang HY, Kim KK.\n
Biochem Biophys Res Commun. 2009 Jun 12;383(4):386-91. Epub 2009 Mar 5.<\/p>\n

76. Purification, Crystallization, and Preliminary Crystallographic Analysis of Est-Y29: A Novel Oligomeric b-Lactamase.\n
Kim S, Joo S, Yoon S, Kim S, Moon J, Ryu Y, Kim KK*,Kim TD* \n
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt 3):310-2. <\/p>\n

75. Crystallization and preliminary X-ray crystallographic studies of the Z-DNA binding domain of a PKR-like kinase (PKZ) in complex with Z-DNA\n
Kim D, Hwang HY, Kim YG, Kim KK.\n
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt 3):267-70. <\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2008<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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74. Analyzing the interaction of RseA and RseB, the two negative regulators of the \uf073E envelope stress response, using a combined bioinformatic and experimental strategy.\n
Ahuja N, Korkin D, Chaba R, Cezairliyan BO, Sauer RT, Kim KK, Gross CA\n
J Biol Chem. 2009 Feb 20;284(8):5403-13. Epub 2008 Dec 222008 <\/p>\n

73. The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA binding domain, hZ\n ADAR1<\/sub>\n
HA SC, Choi J, Hwang HY, Rich A, Kim YG, Kim KK\n
Nucleic Acids Res. 2009 Feb;37(2):629-37. Epub 2008 Dec 11.<\/p>\n

72. The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding mode to Z-DNA.\n
HA SC, Kim DY, Hwang HY, Rich A, Kim YG, Kim KK\n
Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20671-6.<\/p>\n

71. The structural basis for the activation and peptide recognition of bacterial ClpP\n
Kim DY, Kim KK\n
Journal of Molecular Biology 2008 June 13; 379(4): 760-771.<\/p>\n

70. Solution structures of RseA and its complex with RseB.\n
Jin KS, Kim DY, Rho Y,\n  <\/sup>Le VB, Kwon E, Kim KK*Ree M*\n
Journal of Synchrotron Radiation 2008 May 1; 15(3): 219-222.<\/p>\n

69. The mechanism of the temperature-induced bacterial HtrA activation\n
Kim DY, Kwon E, Shin YK, Kweon DH*, Kim KK*\n
Journal of Molecular Biology 2008 Mar 21;377(2): 410-420<\/p>\n

68. The crystal structure of guamerin in complex with chymotrypsin and the modification for an elastase-specific inhibitor\n
Kim H, Chu TTT\n  <\/sup>, Kim DY, Nguyuen CMT, Kim DR, Lee JL, Hahn MJ, Kim KK\n
Journal of Molecular Biology 2008 Feb 8;376(1): 184-192                                                        <\/p>\n

67. Crystallization and Preliminary X-ray Studies of TON_0559, a Putative Member of the Haloacid Dehalogenase (HAD) Superfamily from Thermococcus onnurineus NA1\n
Nguyen CMT, Lee HS, Cho Y, Lee JH, Ha SC, Hwang HY, Kim KK\n
Protein and Peptide letter 2008 Feb 1; 15(2) 235-237.<\/p>\n

66. Crystallization and preliminary X-ray studies of SdiA from Escherichia coli\n
Wu C, Lokanath NK, Kim DY, Nguyen L, Kim KK\n
Acta Crystallograph Sect F Struct Biol Cryst Commun. 2008 Jan 1;64(Pt 1):19-21.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2007<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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65. Characterization of DNA binding activity of Zalpha domains from poxviruses and importance of the beta-wing regions in converting B-DNA to Z-DNA.\n
Quyen DV, HA SC, Lowenhaupt K, Rich A, Kim KK*, Kim YG*\n
Nucleic Acid Research 2007;35(22):7714-20. Epub 2007 Nov 5.<\/p>\n

64. Binding surface in Z\u03b2 domain from human ZBP1 does not require conserved proline residues for Z-DNA binding and B-to-Z-DNA conversion activities.\n
Quyen DV, Ha SC, Kim DY, Lee S, Kim KK*, Kim YG* \n
Bull. Korean Chem. Soc. 2007 Dec 20; 28(12) 1039-1042. <\/p>\n

63. Crystallization and preliminary X-ray studies of TO1713 from Thermococcus onnurineus NA1, a putative member of the haloacid dehalogenase (HAD) superfamily.\n
Le BV, Lee HS, Cho Y, Kang SG, Kim DY, Kim YG, Kim KK\n
Acta Crystallograph Sect F Struct Biol Cryst Commun. 2007 Dec 1;63(Pt 12):1048-50.<\/p>\n

62. Crystal structure of the mouse p53 core domain in zinc-free state\n
Kwon E, Kim DY, Suh SW, Kim KK.\n
Proteins 2008 Jan 1;70(1):280-283 [Epub ahead of print] <\/p>\n

61. Purification, crystallization and preliminary crystallographic analysis of Est25: a ketoprofen-specific hormone-sensitive lipase.\n
Kim S, Joo S, Yoon HC, Ryu Y, Kim KK*, Kim TD*\n
Acta Crystallograph Sect F Struct Biol Cryst Commun. 2007 Jul 1;63(Pt 7):579-81. <\/p>\n

60. Crystal structure of RseB and a model of its binding mode to RseA\n \n
\n <\/a>Kim DY, Jin KS, Kwon E, Ree M, Kim KK.\n
Proc Natl Acad Sci U S A. 2007 May 22;104(21):8779-84. Epub 2007 May 11.<\/p>\n

59. Identification of novel ligands for the Z-DNA binding protein by structure-based virtual screening. \n
Kim YG, Thai KM, Song J, Kim KK, Park HJ\n
Chem. Pharm. Bull Feb 2007; 55(2):340-342.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2006<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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58. A peptide with alternating lysines can act as a highly specific Z-DNA binding domain.\n
Kim YG, Park HJ, Kim KK, Lowenhaupt, K, Rich A. \n
Nucleic Acids Research 2006;34(17):4937-42. Epub 2006 Sep 18<\/p>\n

57. Intracellular localization of human ZBP1: Differential regulation by the Z-DNA binding domain, Zalpha, in splice variants.\n \n
\n <\/a>Pham HT, Park MY, Kim KK, Kim YG, Ahn JH.\n
Biochem Biophys Res Commun. 2006 Sep 15;348(1):145-52. <\/p>\n

56. Crystal Structure of Visfatin\/Pre-B Cell Colony-enhancing Factor 1\/Nicotinamide Phosphoribosyltransferase, Free and in Complex with the Anti-cancer Agent FK-866.\n \n
\n <\/a>Kim MK, Lee JH, Kim H, Park SJ, Kim SH, Kang GB, Lee YS, Kim JB, Kim KK, Suh SW, Eom SH.\n
J Mol Biol. 2006 Sep 8;362(1):66-77.<\/p>\n

55. Sequence-dependent kinetic behavior of protein-induced B- to Z-DNA transition\n \n
\n <\/a>Van Quyen D, Kim KK*, Kim YG*\n
Bull. Korean Chem. Soc. 2006 July 20;27(Pt 7):1459-64.<\/p>\n

54. Biochemical characterization and preliminary X-ray crystallographic study of the domains of human ZBP1 bound to left-handed Z-DNA \n \n
\n <\/a>Ha SC, Van Quyen D, Hwang HY, Oh DB, Brown BA 2nd, Lee SM, Park HJ, Ahn JH, Kim KK*, Kim YG*\n
Biochimica et Biophysica Acta. 2006 Feb;1764(2):320-3. <\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2005<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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53. Structure of Inorganic Pyrophosphatase from Helicobacter pylori\n
Wu CA, Lokanath NK, Kim DY, Park HJ, Hwang H-Y, Suh SW, Kim KK\n
Acta Crystallogr D Biol Crystallogr. 2005 Nov;61(Pt 11):1459-64. <\/p>\n

52. Crystal Structure of a B-DNA-Z-DNA junction Reveals Two Extruded Bases.\n
Ha SC, Lowenhaupt K, Rich A, Kim YG*, Kim KK* \n
Nature. 2005 Oct 20;437(7062):1183-6.<\/p>\n

51. Structure and function of HtrA family proteins, the key players in protein quality control.\n
Kim DY, Kim KK.\n
J Biochem Mol Biol. 2005 May 31;38(3):266-74.<\/p>\n

50. Crystallization and preliminary X-ray crystallographic study of the viral Za domain bound to left-handed Z-DNA \n
Ha SC, Oh DB, Kim KK* and Kim YG*\n
Protein and Peptide Letter 2005 May; 12(4): 391-393. <\/p>\n

49. The target of RNAIII-activating protein(TRAP) from Staphylococcus aureus: purification, crystallization and preliminary X-ray analysis\n
Han Y-H, Kim Y-G, Kim DY, Ha SC, Lokanath NK, Kim KK\n
Biochimica et Biophysica Acta. 2005 Apr 15;1748(1):134-6.<\/p>\n

48. Osmotin is a homolog of mammalian adiponectin and controls apoptosis in yeast through a homolog of mammalian adiponectin receptor.\n
Narasimhan ML, Coca MA, Jin J, Tamauchi T, Ito Y, Kadowaki T, Kim KK, Pardo JM, Damsz B, Hasegawa PM, Yun DJ, Bressan RA\n
Molecular Cell. 2005 Jan 21;17:1-20.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2004<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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47. A poxvirus protein forms a complex with left-handed Z-DNA: crystal structure of a Yatapoxvirus Za bound to DNA \n
Ha SC, Lokanath NK, Quyen DV, Wu CA, Lowenhaupt K, Rich A*, Kim YG*, Kim KK* \n
Proc Natl Acad Sci U S A. 2004 Oct 5;101(40):14367-72.<\/p>\n

46. Crystallization and preliminary X-ray crystallographic study of UDP-glucose pyrophosphorylase (UGPase) from Helicobacter pylori \n
Kim H, Wu CA, Kim DY, Han YJ, Ha SC, Kim CS, Suh SW, Kim KK\n
Acta Crystallogr D Biol Crystallography, 2004 Aug;60(Pt 8):1447-9. <\/p>\n

45. Pressure activation of the chaperone function of small heat shock proteins\n
Toelgyesi F, Bode CS, Smeller L, Kim DR, Kim KK, Heremans K, Fidy J\n
Cellular and Molecular Biology 2004 June;50(4):361-369.<\/p>\n

44. Crystallization and preliminary X-ray crystallographic study of a leech protease inhibitor guamerin and its complex with bovine pancreatic chymotrypsin \n
Kim DR, Kim DY, Chu TTT\n  <\/sup>, Jung KH,\n  <\/sup>Kim KK\n
Biochimica et Biophysica Acta 2004 Jun 1;1699(1-2):285-7<\/p>\n

43. Functional Identification of the SecB Homologue in Methanococcus jannaschii and Direct Interaction of SecB with Trigger Factor\n
Ha SC, Lee TH, Cha SS, Kim KK\n
Biochem Biophys Res Commun 2004 March 19;315(4): 1039-1044.<\/p>\n

42. Evidence that the Vaccinia virulence factor E3L binds to Z-DNA in vivo – implications for development of a therapy for poxvirus infection.\n
Kim YG, Lowenhaupt K, Oh DB, Kim KK, Rich A\n
Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1514-8. <\/p>\n

41. Bound water molecule is crucial in initiating auto-catalytic precursor activation in a N-terminal hydrolase.\n
Yoon J, Oh B, Kim K, Park J, Han D, Kim KK, Cha SS, Lee D, Kim Y.\n
J Biol Chem. 2004 Jan 2;279(1):341-347. <\/p>\n

40. Position of Pro and Ser near Glu\n 7.32<\/sup> in the Extracellular Loop 3 of Mammalian and Nonmammalian Gonadotropin-Releasing Hormone (GnRH) Receptors Is a Critical Determinant for Differential Ligand Selectivity for Mammalian GnRH and Chicken GnRH-II. \n
Wang C, Yun O, Maiti K, Oh DY, Kim KK, Chae CH, Lee CJ, Seong JY, Kwon HB \n
Molecular Endocrinology 2004 Jan; 18(1): 105-116. <\/p>\n

39. Crystal Structure of Osmotin, a Plant Antifungal Protein.\n
Min K, Ha SC, Hasegawa PM, Bressan RA, Yun D-J, Kim KK.\n
Proteins: Structure Function and Genetics 2004 Jan 2;54(1): 170 -173.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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2003<\/h1>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n
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38. Crystal structure of ClpX molecular chaperone from Helicobacter Pylori \n
Kim DY, Kim KK \n
J Biol Chem. 2003 Dec 12;278(50):50664-70. <\/p>\n

37. Purification, crystallization and preliminary X-ray studies of ClpX from Helicobacter Pylori \n
Kim DY, Wu CA, Kim DR, Ha SC, Han Y-H, Kim KK\n
Acta Crystallogr D Biol Crystallogr. 2003 Sep 1; 59(9): 1642-1644.<\/p>\n

36. Activation mechanism of HSP16.5 from Methanococcus jannaschii \n
Kim DR, Lee I, Ha SC, Kim KK\n
Biochem Biophys Res Commun 2003 August 8;307(4): 991-998.<\/p>\n

35. On the mechanism of chaperone activity of the small heat-shock protein of Methanococcus jannaschii\n
Kim R, Lai L, Lee HH, Cheong GW, Kim KK, Wu Z, Yokota H, Marqusee S, Kim SH.\n
Proc Natl Acad Sci U S A 2003 Jul 8; 100(14): 8151-8155.<\/p>\n

34. Crystal structure of the protease domain of a heat-shock protein HtrA from Thermotoga maritima\n
Kim DY, Kim DR, Ha SC, Lokanath NK, Lee CJ, Hwang HY, Kim KK\n
J Biol Chem 2003 Feb 21; 278(8); 6543-6551<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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33. Dynamic and clustering model of bacterial chemotaxis receptors: Structural basis for signaling and high sensitivity \n
Kim S-H, Wang W, Kim KK\n
Proc. Natl. Acad. Aci. USA 2002 Sep 3;99(18):11611-5.<\/p>\n

32. Cloning, purification, crystallization and preliminary X-ray studies of RFC boxes II-VIII of replication factor C from Methanococcus jannaschii\n
Lee I, Lokanath NK, Min K, Ha SC, Kim DY, Kim KK\n
Acta Crystallogr D Biol Crystallogr. 2002 Mar;58(Pt 3): 519-521<\/p>\n

31. Crystallization and preliminary X-ray studies of the protease domain of the heat shock protein HtrA from Thermotoga maritima\n
Kim DY, Kim KK\n
Acta Crystallogr D Biol Crystallogr. 2002 Jan; 58(Pt 1): 170-172<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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30. Crystal structure of the MJ0490 gene product of the hyperthermophilic archaebacterium Methanococcus jannaschii, a novel member of the lactate\/malate family of dehydrogenases.\n
Lee BI, Chang C, Cho SJ, Eom SH, Kim KK, Yu YG, Suh SW.\n
J Mol Biol 2001 Apr 13;307(5):1351-62<\/p>\n

29. Crystallization and preliminary crystallographic studies of an antimicrobial protein from Pharbitis nil\n
Ha SC, Min K, Koo C, Kim Y, Yun DJ, Cho MJ, Kim KK\n
Acta Crystallogr D Biol Crystallogr. 2001 Feb;57(Pt 2):263-265.<\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n

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28. Nucleoside diphosphate kinase from the hyperthermophilic archaeon methanococcus jannaschii: overexpression, crystallization and preliminary X-ray crystallographic analysis.\n
Min K, Song HK, Chang C, Lee JY, Eom SH, Kim KK, Yu YG, Suh SW\n
Acta Crystallogr D Biol Crystallogr. 2000 Nov;56 (Pt 11):1485-7.<\/p>\n

27. Crystallization and preliminary X-ray diffraction analysis of  Saccharomyces cerevisiae<\/em> ygr203p, a homologue of acr2 arsenate reductase.\n
Moon J, Kim YS, Lee JY, Cho SJ, Song HK, Cho JH, Kim BM, Kim KK, Suh SW.\n
Acta Crystallogr D Biol Crystallogr. 2000 Jun;56 (Pt 6):778-80.<\/p>\n

26. Crystal Structure of the Ribosome Recycling Factor from Escherichia coli.<\/em>\n
Kim KK, Min S, Suh SW.\n
EMBO J. 2000 May 15;19(10), 2362-2370.<\/p>\n

25. Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution.\n
Wang H, Boisvert D, Kim KK, Kim R, Kim SH. \n
EMBO J. 2000 Feb 1;19(3):317-23.<\/p>\n

24. Crystallization and Preliminary Crystallographic Studies of Ribosome Recycling Factor from Escherichia coli.\n \n
\n <\/a>Yun J, Kim W, Ha SC, Eom SH, Suh SW, Kim KK.\n
Acta Crystallogr D Biol Crystallogr. 2000 Jan;56(Pt 1):84-5.<\/p>\n

23. Four Helical-Bundle Structure of the Cytoplasmic Domain of a Serine Chemotaxis Receptor.\n
Kim KK, Yokota H, & Kim S-H. \n
Nature. 1999 Aug 19;400(6746):787-92.<\/p>\n

22. Structure-Based Assignment of the Biochemical Function of a Hypothetical Protein: a Test Case of Structural Genomics. \n
Zarembinski TI, Hung LW, Mueller-Dieckmann HJ, Kim KK, Yokota H, Kim R, Kim SH.\n
Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15189-93.<\/p>\n

21. Crystal Structure of Eukaryotic Translation Initiation Factor 5A from Methanococcus janaschii at 1.8 A Resolution.\n
Kim KK, Hung LW, Yokota H, Kim R, Kim SH.\n
Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10419-24<\/p>\n

20. Crystal Structure of a Small Heat-Shock Protein.\n
Kim KK, Kim R, Kim SH.\n
Nature. 1998 Aug 6;394(6693):595-9.<\/p>\n

19. Small Heat Shock Protein of Methanococcus janaschii, a Hyperthermophile.\n
Kim R, Kim KK, Yokota H, Kim SH.\n
Proc Natl Acad Sci U S A. 1998 Aug 4;95(16):9129-33.<\/p>\n

18. Electron Transfer by Domain Movement in Cytochrome bc1.\n
Zhang Z, Huang L, Shulmeister VM, Chi YI, Kim KK, Hung LW, Crofts AR, Berry EA, Kim SH.\n
Nature. 1998 Apr 16;392(6677):677-84.<\/p>\n

17. Purification and Preliminary X-ray Crystallographic Data of Small Heat Shock Protein Homolog from Methanococcus jannaschii, a Hyperthermophile.\n
Kim KK, Yokota H, Santoso S, Lerner D, Kim R, Kim SH.\n
J Struct Biol. 1998 Jan;121(1):76-80.<\/p>\n

16. Crystal Structure of Carboxylesterase from Pseudomonas fluorescens: an Hydrolase Fold with Broad Substrate Specificity. \n
Kim KK, Song HK, Shin DH, Hwang KY, Choe S, Yoo OJ, Suh SW.\n
Structure. 1997 Dec 15;5(12):1571-84.<\/p>\n

15. High Resolution Crystal Structures of 5-3-Ketosteroid Isomerase with and without a Reaction Intermediate Analogue.\n
Kim, S. W. Cha, S.-S., Cho, H.-S., Kim, J.-S., Ha, N.-C., Cho, M.-J., Joo, S., Kim, K. K., Choi, K. Y. & Oh, B.-H. (1997) \n
Biochemistry 36, 14030-14036.<\/p>\n

14. Cloning, Expression and Crystallization of a Hyperthermophile Protein that is Homologous to the Eukaryotic Translation Initiation Factor, eIF5A.\n
Kim KK, Yokota H, Kim R, Kim SH.\n
Protein Sci. 1997 Oct;6(10):2268-70.<\/p>\n

13. The Crystal Structure of a Triacylglycerol Lipase from Pseudomonas cepacia Reveals a Highly Open Conformation in the Absence of a bound Inhibitor.\n
Kim KK, Song HK, Shin DH, Hwang KY, Suh SW.\n
Structure. 1997 Feb 15;5(2):173-85.<\/p>\n

12. Three-dimensional Structure of Human Cyclin H, a Positive Regulator of the CDK-Activating Kinase (Cover Article).\n
Kim KK, Chamberlin HM, Morgan DO, Kim SH.\n
Nat Struct Biol. 1996 Oct;3(10):849-55.<\/p>\n

11. High-resolution crystal structure of the non-specific lipid-transfer protein from maize seedlings.\n
Shin DH, Lee JY, Hwang KY, Kim KK, Suh SW.\n
Structure. 1995 Feb 15;3(2):189-99.<\/p>\n

10. Crystallization, Molecular Replacement Solution, and Refinement of Tetrameric \uf062-amylase from Sweet Potato.\n
Cheong, C. G., Eom, S. H., Chang, C., Shin, D. H., Song, H. K., Min, K., Moon, J. H., Kim, K. K., Hwang, K. Y., & Suh, S. W. (1995) \n
Proteins: Struct. Funct. Genet. 21, 105-117.<\/p>\n

9. Crystallization and Preliminary X-ray Crystallographic Study of Ribosome-Inactivating Protein from Barly Seeds.\n
Song, H. K., Hwang, K. Y., Kim, K. K., & Suh, S. W. (1994) \n
Acta. Crystallogr. D50, 910-912.<\/p>\n

8. Crystallization and Preliminary X-ray Crystallographic Analysis of Phospholipid Transfer Protein from Maize Seedlings.\n
Shin, D. H., Hwang, K. Y., Kim, K. K., Kim, S., Sweet, R. M., & Suh, S. W.  (1994) \n
Proteins: Struct. Funct. Genet. 19, 80-83. <\/p>\n

7. Crystallization and Preliminary X-ray Crystallographic Analysis of Chitinase from Barley Seeds.\n
Song, H. K., Hwang, K. Y., Kim, K. K., & Suh, S. W. (1993) \n
Proteins: Struct. Funct. Genet. 17, 107-109. <\/p>\n

6. Crystallization and Preliminary X-ray Crystallographic Study of the Protease Inhibitor Ecotin.\n
Shin, D. H., Hwang, K. Y., Kim, K. K., Lee, H. R., Lee, C. S., Chung, C. H., & Suh, S. W. (1993) \n
J. Mol. Biol. 229, 1157-1158. <\/p>\n

5. Crystallization and Preliminary X-ray Crystallographic Study of Probable Amylase\/Protease Inhibitor-B from Rice Seeds. \n
Hwang, K. Y., Kim, K. K., Min, K., Eom, S. H., Yu, Y. G., Kim, S., Sweet, R. M., & Suh, S. W. (1993) \n
J. Mol. Biol. 229, 255-257. <\/p>\n

4. Crystallization and Preliminary X-ray Crystallographic Study of \uf061-Amylase from Bacillus subtilis.\n
Chang, C. S., Kim, K. K., Hwang, K. Y., Choi, M. U., & Suh, S. W. (1993) \n
J. Mol. Biol. 229, 235-238. <\/p>\n

3. Crystallization and Preliminary X-ray Crystallographic Study of Carboxylesterase from Pseudomonas fluorescens. \n
Kim, K. K., Hwang, K. Y., Jang, W. H., Lee, H., Yoo, O. J., Choi, M. U., &  Suh, S.W. (1993). \n
Arch. Biochem. Biophys. 302, 417-419.<\/p>\n

2. Crystallization and Preliminary  X-ray Crystallographic Study of Arylesterase from Pseudomonas fluorescens. \n
Kim, K. K., Hwang, K. Y., Choi, K. D., Kang, J. H., Yoo, O. J., & Suh, S. W. (1993) \n
Proteins: Struct. Funct. Genet. 15, 213-215. <\/p>\n

1. Crystallization and Preliminary X-ray Crystallographic Study of Lipase from Pseudomonas cepacia.\n
Kim, K. K., Hwang, K. Y., Jeon, H. S., Kim, S., Sweet, R. M., Yang, C. H., & Suh, S. W. (1992) \n
J. Mol. Biol. 227, 1258-1262. <\/p>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n <\/div>\n<\/div>","protected":false},"excerpt":{"rendered":"

2025 246. G-quadruplex-dependent transcriptional regulation by molecular condensation in the Bcl3 promoter. Yoo W, Song YW, Bansal V, Kim KK. Nucleic Acids Res. 2025 Aug 27;53(16):gkaf827. doi: 10.1093\/nar\/gkaf827. 245. In vivo brown adipogenic reprogramming induced by a small molecule cocktail Kannappan S, Kim Y, De D, Ginting RP, Yang HG, Kim K, Bansal V, Jung […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"page-templates\/full-width-page.php","meta":{"footnotes":""},"class_list":["post-869","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/anhkim.site\/index.php\/wp-json\/wp\/v2\/pages\/869","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/anhkim.site\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/anhkim.site\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/anhkim.site\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/anhkim.site\/index.php\/wp-json\/wp\/v2\/comments?post=869"}],"version-history":[{"count":15,"href":"https:\/\/anhkim.site\/index.php\/wp-json\/wp\/v2\/pages\/869\/revisions"}],"predecessor-version":[{"id":1406,"href":"https:\/\/anhkim.site\/index.php\/wp-json\/wp\/v2\/pages\/869\/revisions\/1406"}],"wp:attachment":[{"href":"https:\/\/anhkim.site\/index.php\/wp-json\/wp\/v2\/media?parent=869"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}